This article is from the X-Men Comic Books FAQ, by Kate the Short (email@example.com) with numerous contributions by others.
We hope so.
During the aftermath of The Twelve storyline, Cyclops was thought dead,
although Apocalypse had merely disappeared as a merged "Cyclopalypse"-
style being, with his soul in Cyke's body. Eventually, Phoenix and Cable
decided that Cyclops might be alive, and they went looking for him.
During the Search for Cyclops mini-series, Phoenix and Cable found
Cyclops. Phoenix professed her love for Scott, and was able to rip
Poccy's astral self out of Scott's body. Cable then impaled the astral
form with his psimitar. This apparently killed Apocalypse.