Description

This article is from the Biological Information Theory and Chowder Society FAQ, by Thomas D. Schneider toms@ncifcrf.gov.

27 What are sequence logos?

A sequence logo is a graphical
method for showing patterns created
by using information theory.

How do i find sequence logos on the web?

http://www-lecb.ncifcrf.gov/~toms/sequencelogo.html

Is there a shell script for making sequence logos?

Yes, you will find the one Shmuel Pietrokovski wrote in the ftp archive
ftp.ncifcrf.gov in pub/delila/logoaid. (Also available in
bioinformatics.weizmann.ac.il/pub/software/logoaid.)

Is there a world wide web page for making sequence logos?

Yes, Steve Brenner has done it!

http://www.bio.cam.ac.uk/seqlogo/

 

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science, engineering, Biological Information Theory, Chowder Society. entropy, yockey, jaynes, schneider